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NIH: National Institute of Diabetes and Digestive and Kidney Diseases NIH: National Institute of Diabetes and Digestive and Kidney Diseases

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Next: Dihedral Angle Restraints Up: Harmonic Coordinate Restraints Previous: Example: Point Restraints

Example: Plane and Point Restraints

This example demonstrates the simultaneous use of plane and point restraints:
coordinates @file1
vector do (refx=x) (all)
vector do (refy=y) (all)
vector do (refz=z) (all)
vector do ( harmonic=0.0 )  ( all )
vector do ( harmonic=20.0 ) ( resid 1 and name ca )
vector do ( harmonic=-20.0 ) ( resid 10 and name ca )
restraints harmonic exponent=2 normal=(0 0 1) end  
flags include harm end
dynamics Verlet nstep=1000 timestep=0.001 firsttemp=300 end
The ${C}^{\alpha}$ atom of residue 1 will be harmonically restrained to its initial position in “file1”. However, the ${C}^{\alpha}$ atom of residue 10 will be restrained only in the z direction; its motions are unrestricted parallel to the x-y plane.



Xplor-NIH 2025-03-21
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