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Pydoc: module surfTessellation

surfTessellation

index

surfTessleation: Internal class object which builds and store tessellation of hydrated protein surface Python constructor: SurfTessellation(sel,radii) sel - atom selection radii - list of van der Waals raii. C++ constructor: SurfTessellation( const AtomSel& sel, const CDSVector<float_type>& radii) methods update_radii() - updates van der Waals radii of atoms. check_extents_of_input() - checks if the set of atoms spans the space which is affordable for tessellation. updateValues() - retessellates with updated values. calcSurf() - tessellates surface. makeSurfTessellation( const AtomSel& selection, const CDSVector<float_type>& radii) - creates new surfTessellation object and returns an rc pointer to this object. getAtomSel() - returns atom selection which is used to build surfTessellation. help() - this help. # This file was automatically generated by SWIG (http://www.swig.org). # Version 4.0.2 # # Do not make changes to this file unless you know what you are doing--modify # the SWIG interface file instead.

Classes

builtins.object

SurfTessellation
rc_SurfTessellation

oldSurfTessellation = class SurfTessellation(builtins.object)

oldSurfTessellation(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs)

__repr__ = _swig_repr(self)

calcSurf(self, *args, **kwargs) -> 'void'

check_extents_of_input(self, *args, **kwargs) -> 'int'

diffShell(self, *args, **kwargs) -> 'float_type'

getAtomSel(self, *args, **kwargs) -> 'AtomSel const'

get_rmsd(self, *args, **kwargs) -> 'float_type'

makeStale(self, *args, **kwargs) -> 'void'

moveTol(self, *args, **kwargs) -> 'float_type const'

needsRetessellation(self, *args, **kwargs) -> 'bool'

retessellateIfNecessary(self, *args, **kwargs) -> 'bool'

savePrev(self, *args, **kwargs) -> 'bool const'

setDiffShell(self, *args, **kwargs) -> 'void'

setMoveTol(self, *args, **kwargs) -> 'void'

setSavePrev(self, *args, **kwargs) -> 'void'

setVerbose(self, *args, **kwargs) -> 'void'

stale(self, *args, **kwargs) -> 'bool'

tessellate(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

update_radii(self, *args, **kwargs) -> 'void'

verbose(self, *args, **kwargs) -> 'bool const'

Static methods defined here:

__swig_destroy__ = delete_SurfTessellation(...)

makeSurfTessellation(*args, **kwargs) -> 'rc_SurfTessellation'

Data descriptors defined here:

__dict__: dictionary for instance variables (if defined)

__weakref__: list of weak references to the object (if defined)

atoms_swap

diffShell_

oldSurf

oldSurfUsed

radii

surf

thisown: The membership flag

class rc_SurfTessellation(builtins.object)

rc_SurfTessellation(*args)

Methods defined here:

__deref__(self, *args, **kwargs) -> 'SurfTessellation *'

__init__(self, *args): Initialize self. See help(type(self)) for accurate signature.

__ref__(self, *args, **kwargs) -> 'SurfTessellation &'

__repr__ = _swig_repr(self)

calcSurf(self, *args, **kwargs) -> 'void'

check_extents_of_input(self, *args, **kwargs) -> 'int'

count(self, *args, **kwargs) -> 'int'

decr(self, *args, **kwargs) -> 'void'

diffShell(self, *args, **kwargs) -> 'float_type'

forceDelete(self, *args, **kwargs) -> 'void'

getAtomSel(self, *args, **kwargs) -> 'AtomSel const'

get_rmsd(self, *args, **kwargs) -> 'float_type'

incr(self, *args, **kwargs) -> 'void'

makeStale(self, *args, **kwargs) -> 'void'

makeSurfTessellation(self, *args, **kwargs) -> 'rc_SurfTessellation'

moveTol(self, *args, **kwargs) -> 'float_type const'

needsRetessellation(self, *args, **kwargs) -> 'bool'

ptr(self, *args, **kwargs) -> 'SurfTessellation *'

pyXplorHelp(self, *args, **kwargs) -> 'String'

release(self, *args, **kwargs) -> 'SurfTessellation *'

reset(self, *args, **kwargs) -> 'void'

retessellateIfNecessary(self, *args, **kwargs) -> 'bool'

savePrev(self, *args, **kwargs) -> 'bool const'

setDiffShell(self, *args, **kwargs) -> 'void'

setMoveTol(self, *args, **kwargs) -> 'void'

setSavePrev(self, *args, **kwargs) -> 'void'

setVerbose(self, *args, **kwargs) -> 'void'

stale(self, *args, **kwargs) -> 'bool'

tessellate(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

update_radii(self, *args, **kwargs) -> 'void'

verbose(self, *args, **kwargs) -> 'bool const'

Static methods defined here:

__swig_destroy__ = delete_rc_SurfTessellation(...)

Data descriptors defined here:

__dict__: dictionary for instance variables (if defined)

__weakref__: list of weak references to the object (if defined)

atoms_swap

diffShell_

oldSurf

oldSurfUsed

radii

surf

thisown: The membership flag

Functions

SurfTessellation(*args)

SurfTessellation_makeSurfTessellation(*args, **kwargs) -> 'rc_SurfTessellation'

pyXplorHelp(*args) -> 'String'