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- builtins.object
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- CDSList_PlaneDistRestraint
- Modified
- ModifiedBase
- PlaneDistPot
- PlaneDistPot_LetterClass
- Restraint_PlaneDistPot
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- PlaneDistRestraint
- rc_ptr_PlaneDistRestraint
class CDSList_PlaneDistRestraint(builtins.object) |
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CDSList_PlaneDistRestraint(*args)
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Methods defined here:
- __delitem__(self, *args, **kwargs) -> 'void'
- __getitem__(self, *args) -> 'CDSList< CDS::rc_ptr< PlaneDistRestraint > >'
- __getslice__(self, *args, **kwargs) -> 'CDSList< CDS::rc_ptr< PlaneDistRestraint > >'
- __init__(self, *args)
- Initialize self. See help(type(self)) for accurate signature.
- __len__(self, *args, **kwargs) -> 'int'
- __repr__ = _swig_repr(self)
- __setitem__(self, *args, **kwargs) -> 'void'
- append(self, *args, **kwargs) -> 'void'
- help(self, *args, **kwargs) -> 'String'
- remove(self, *args, **kwargs) -> 'void'
- removeAll(self, *args, **kwargs) -> 'void'
Static methods defined here:
- __swig_destroy__ = delete_CDSList_PlaneDistRestraint(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- thisown
The membership flag
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class Modified(builtins.object) |
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Modified(*args, **kwargs)
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Methods defined here:
- __call__(self, *args, **kwargs) -> 'int'
- Call self as a function.
- __init__(self, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __repr__ = _swig_repr(self)
- asString(self, *args, **kwargs) -> 'String'
- assertClear(self, *args, **kwargs) -> 'void'
- clear(self, *args, **kwargs) -> 'void'
- set(self, *args, **kwargs) -> 'void'
- update(self, *args, **kwargs) -> 'void'
- value(self, *args, **kwargs) -> 'int'
Static methods defined here:
- __swig_destroy__ = delete_Modified(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- thisown
The membership flag
Data and other attributes defined here:
- MOD_SELF = 1
- MOD_SIMULATION = 2
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class ModifiedBase(builtins.object) |
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ModifiedBase(*args, **kwargs)
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Methods defined here:
- __init__(self, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __repr__ = _swig_repr(self)
- registerTo(self, *args, **kwargs) -> 'void'
- unRegister(self, *args, **kwargs) -> 'void'
- updateValues(self, *args, **kwargs) -> 'void'
Static methods defined here:
- __swig_destroy__ = delete_ModifiedBase(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- modified
- registeredSimulations
- thisown
The membership flag
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class PlaneDistPot_LetterClass(builtins.object) |
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PlaneDistPot_LetterClass(*args, **kwargs)
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Methods defined here:
- __init__(self, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __repr__ = _swig_repr(self)
- addRestraints(self, *args, **kwargs) -> 'void'
- asympSlope(self, *args, **kwargs) -> 'float_type const'
- aveExp(self, *args, **kwargs) -> 'float_type const'
- aveType(self, *args, **kwargs) -> 'PlaneDistPot::PlaneDistAveType'
- calcDerivs(self, *args, **kwargs) -> 'void'
- calcEnergy(self, *args, **kwargs) -> 'float_type'
- calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'
- dOffset(self, *args, **kwargs) -> 'float_type const'
- freedom(self, *args, **kwargs) -> 'String const'
- hardExp(self, *args, **kwargs) -> 'float_type const'
- info(self, *args, **kwargs) -> 'String'
- nMono(self, *args, **kwargs) -> 'int const'
- numRestraints(self, *args, **kwargs) -> 'int'
- oAtom(self, *args, **kwargs) -> 'Atom const'
- planeNorm(self, *args, **kwargs) -> 'Vec3'
- potType(self, *args, **kwargs) -> 'PlaneDistPot::PlaneDistPotType'
- pyXplorHelp(self, *args, **kwargs) -> 'String'
- rSwitch(self, *args, **kwargs) -> 'float_type const'
- restraints(self, *args, **kwargs) -> 'CDSList< CDS::rc_ptr< PlaneDistRestraint > >'
- rms(self, *args, **kwargs) -> 'double'
- setAsympSlope(self, *args, **kwargs) -> 'void'
- setAveExp(self, *args, **kwargs) -> 'void'
- setAveType(self, *args, **kwargs) -> 'void'
- setDOffset(self, *args, **kwargs) -> 'void'
- setFreedom(self, *args, **kwargs) -> 'void'
- setHardExp(self, *args, **kwargs) -> 'void'
- setNMono(self, *args, **kwargs) -> 'void'
- setOAtom(self, *args, **kwargs) -> 'void'
- setPotType(self, *args, **kwargs) -> 'void'
- setRSwitch(self, *args, **kwargs) -> 'void'
- setShowAllRestraints(self, *args, **kwargs) -> 'void'
- setSoftExp(self, *args, **kwargs) -> 'void'
- setUseSign(self, *args, **kwargs) -> 'void'
- setVerbose(self, *args, **kwargs) -> 'void'
- setXAtom(self, *args, **kwargs) -> 'void'
- setYAtom(self, *args, **kwargs) -> 'void'
- showAllRestraints(self, *args, **kwargs) -> 'bool const'
- showRestraints(self, *args, **kwargs) -> 'String'
- showViolations(self, *args, **kwargs) -> 'String'
- simulation(self, *args, **kwargs) -> 'Simulation *'
- softExp(self, *args, **kwargs) -> 'float_type const'
- updateValues(self, *args, **kwargs) -> 'void'
- useSign(self, *args, **kwargs) -> 'bool const'
- verbose(self, *args, **kwargs) -> 'bool const'
- violations(self, *args, **kwargs) -> 'float_type'
- xAtom(self, *args, **kwargs) -> 'Atom const'
- yAtom(self, *args, **kwargs) -> 'Atom const'
Static methods defined here:
- __swig_destroy__ = delete_PlaneDistPot_LetterClass(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- thisown
The membership flag
Data and other attributes defined here:
- AVERAGE = 0
- CENTER = 1
- GAUSSIAN = 3
- HARD = 1
- LOGNORMAL = 2
- SIGMOID = 4
- SOFT = 0
- SUM = 2
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class PlaneDistRestraint(Restraint_PlaneDistPot) |
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PlaneDistRestraint(*args, **kwargs)
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- Method resolution order:
- PlaneDistRestraint
- Restraint_PlaneDistPot
- builtins.object
Methods defined here:
- __eq__(self, *args, **kwargs) -> 'void'
- Return self==value.
- __init__(self, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __repr__ = _swig_repr(self)
- asString(self, *args, **kwargs) -> 'String'
- calcDistanceDiff(self, *args, **kwargs) -> 'double'
- comment(self, *args, **kwargs) -> 'String'
- d(self, *args, **kwargs) -> 'double'
- dMinus(self, *args, **kwargs) -> 'double'
- dPlus(self, *args, **kwargs) -> 'double'
- deriv(self, *args, **kwargs) -> 'void'
- dist(self, *args, **kwargs) -> 'double'
- energy(self, *args, **kwargs) -> 'double'
- logDiff(self, *args, **kwargs) -> 'double'
- name(self, *args, **kwargs) -> 'String'
- ok(self, *args, **kwargs) -> 'int'
- setWeight(self, *args, **kwargs) -> 'void'
- status(self, *args, **kwargs) -> 'PlaneDistRestraint::Status'
- weight(self, *args, **kwargs) -> 'float_type'
Static methods defined here:
- __swig_destroy__ = delete_PlaneDistRestraint(...)
Data descriptors defined here:
- sel
- thisown
The membership flag
- variance
- verbose
Data and other attributes defined here:
- GREATER = 1
- INSIDE = 2
- LESS = 0
- __hash__ = None
Methods inherited from Restraint_PlaneDistPot:
- diff(self, *args, **kwargs) -> 'float_type'
- setName(self, *args, **kwargs) -> 'void'
- violated(self, *args, **kwargs) -> 'bool'
Data descriptors inherited from Restraint_PlaneDistPot:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
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class Restraint_PlaneDistPot(builtins.object) |
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Restraint_PlaneDistPot(*args, **kwargs)
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Methods defined here:
- __init__(self, *args, **kwargs)
- Initialize self. See help(type(self)) for accurate signature.
- __repr__ = _swig_repr(self)
- diff(self, *args, **kwargs) -> 'float_type'
- name(self, *args, **kwargs) -> 'String const'
- setName(self, *args, **kwargs) -> 'void'
- violated(self, *args, **kwargs) -> 'bool'
Static methods defined here:
- __swig_destroy__ = delete_Restraint_PlaneDistPot(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- thisown
The membership flag
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class rc_ptr_PlaneDistRestraint(builtins.object) |
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rc_ptr_PlaneDistRestraint(*args)
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Methods defined here:
- __deref__(self, *args, **kwargs) -> 'PlaneDistRestraint *'
- __eq__(self, *args, **kwargs) -> 'void'
- Return self==value.
- __init__(self, *args)
- Initialize self. See help(type(self)) for accurate signature.
- __ref__(self, *args, **kwargs) -> 'PlaneDistRestraint &'
- __repr__ = _swig_repr(self)
- asString(self, *args, **kwargs) -> 'String'
- calcDistanceDiff(self, *args, **kwargs) -> 'double'
- comment(self, *args, **kwargs) -> 'String'
- count(self, *args, **kwargs) -> 'int'
- d(self, *args, **kwargs) -> 'double'
- dMinus(self, *args, **kwargs) -> 'double'
- dPlus(self, *args, **kwargs) -> 'double'
- decr(self, *args, **kwargs) -> 'void'
- deriv(self, *args, **kwargs) -> 'void'
- diff(self, *args, **kwargs) -> 'float_type'
- dist(self, *args, **kwargs) -> 'double'
- energy(self, *args, **kwargs) -> 'double'
- forceDelete(self, *args, **kwargs) -> 'void'
- incr(self, *args, **kwargs) -> 'void'
- logDiff(self, *args, **kwargs) -> 'double'
- name(self, *args, **kwargs) -> 'String'
- ok(self, *args, **kwargs) -> 'int'
- ptr(self, *args, **kwargs) -> 'PlaneDistRestraint *'
- release(self, *args, **kwargs) -> 'PlaneDistRestraint *'
- reset(self, *args, **kwargs) -> 'void'
- setName(self, *args, **kwargs) -> 'void'
- setWeight(self, *args, **kwargs) -> 'void'
- status(self, *args, **kwargs) -> 'PlaneDistRestraint::Status'
- violated(self, *args, **kwargs) -> 'bool'
- weight(self, *args, **kwargs) -> 'float_type'
Static methods defined here:
- __swig_destroy__ = delete_rc_ptr_PlaneDistRestraint(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- sel
- thisown
The membership flag
- variance
- verbose
Data and other attributes defined here:
- __hash__ = None
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realPlaneDistPot = class PlaneDistPot(builtins.object) |
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realPlaneDistPot(*args)
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Methods defined here:
- __deref__(self, *args, **kwargs) -> 'PlaneDistPot *'
- __init__(self, *args)
- __oldinit__ = __init__(self, *args, **kwargs)
- __ref__(self, *args, **kwargs) -> 'PlaneDistPot &'
- __repr__ = _swig_repr(self)
- addRestraints(self, *args, **kwargs) -> 'void'
- asympSlope(self, *args, **kwargs) -> 'float_type const'
- aveExp(self, *args, **kwargs) -> 'float_type const'
- aveType(self, *args, **kwargs) -> 'PlaneDistPot::PlaneDistAveType'
- calcDerivs(self, *args, **kwargs) -> 'void'
- calcEnergy(self, *args, **kwargs) -> 'float_type'
- calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'
- dOffset(self, *args, **kwargs) -> 'float_type const'
- decrRefCnt(self, *args, **kwargs) -> 'void'
- freedom(self, *args, **kwargs) -> 'String const'
- hardExp(self, *args, **kwargs) -> 'float_type const'
- incrRefCnt(self, *args, **kwargs) -> 'void'
- info(self, *args, **kwargs) -> 'String'
- instanceData(self, *args, **kwargs) -> 'PyObject *'
- instanceName(self, *args, **kwargs) -> 'char const *'
- nMono(self, *args, **kwargs) -> 'int const'
- numRestraints(self, *args, **kwargs) -> 'int'
- oAtom(self, *args, **kwargs) -> 'Atom const'
- planeNorm(self, *args, **kwargs) -> 'Vec3'
- potName(self, *args, **kwargs) -> 'char const *'
- potType(self, *args, **kwargs) -> 'PlaneDistPot::PlaneDistPotType'
- pyXplorHelp(self, *args, **kwargs) -> 'String'
- rSwitch(self, *args, **kwargs) -> 'float_type const'
- refCnt(self, *args, **kwargs) -> 'int'
- registerInstanceData(self, *args, **kwargs) -> 'void'
- registerTo(self, *args, **kwargs) -> 'void'
- resetInstanceName(self, *args, **kwargs) -> 'void'
- resetPotName(self, *args, **kwargs) -> 'void'
- restraints(self, *args, **kwargs) -> 'CDSList< CDS::rc_ptr< PlaneDistRestraint > >'
- rms(self, *args, **kwargs) -> 'double'
- scale(self, *args, **kwargs) -> 'float_type const'
- setAsympSlope(self, *args, **kwargs) -> 'void'
- setAveExp(self, *args, **kwargs) -> 'void'
- setAveType(self, *args, **kwargs) -> 'void'
- setDOffset(self, *args, **kwargs) -> 'void'
- setFreedom(self, *args, **kwargs) -> 'void'
- setHardExp(self, *args, **kwargs) -> 'void'
- setNMono(self, *args, **kwargs) -> 'void'
- setOAtom(self, *args, **kwargs) -> 'void'
- setPotType(self, *args, **kwargs) -> 'void'
- setRSwitch(self, *args, **kwargs) -> 'void'
- setScale(self, *args, **kwargs) -> 'void'
- setShowAllRestraints(self, *args, **kwargs) -> 'void'
- setSoftExp(self, *args, **kwargs) -> 'void'
- setThreshold(self, *args, **kwargs) -> 'void'
- setUseSign(self, *args, **kwargs) -> 'void'
- setVerbose(self, *args, **kwargs) -> 'void'
- setXAtom(self, *args, **kwargs) -> 'void'
- setYAtom(self, *args, **kwargs) -> 'void'
- showAllRestraints(self, *args, **kwargs) -> 'bool const'
- showRestraints(self, *args, **kwargs) -> 'String'
- showViolations(self, *args, **kwargs) -> 'String'
- simulation(self, *args, **kwargs) -> 'Simulation *'
- softExp(self, *args, **kwargs) -> 'float_type const'
- threshold(self, *args, **kwargs) -> 'float_type const'
- unRegister(self, *args, **kwargs) -> 'void'
- updateDelta(self, *args, **kwargs) -> 'void'
- updateValues(self, *args, **kwargs) -> 'void'
- useSign(self, *args, **kwargs) -> 'bool const'
- verbose(self, *args, **kwargs) -> 'bool const'
- violations(self, *args, **kwargs) -> 'float_type'
- xAtom(self, *args, **kwargs) -> 'Atom const'
- yAtom(self, *args, **kwargs) -> 'Atom const'
Static methods defined here:
- __swig_destroy__ = delete_PlaneDistPot(...)
Data descriptors defined here:
- __dict__
dictionary for instance variables (if defined)
- __weakref__
list of weak references to the object (if defined)
- instanceDataCleanup
- instanceDataCreate
- instanceData_
- modified
- registeredSimulations
- thisown
The membership flag
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