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Python: module pasdPot

pasdPot

[ no help available yet] # This file was automatically generated by SWIG (http://www.swig.org). # Version 4.0.2 # # Do not make changes to this file unless you know what you are doing--modify # the SWIG interface file instead.

Classes



builtins.object

CDSList_PeakPtr
Modified
ModifiedBase
PASDPot
PASDPot_LetterClass
PASD_DistPot
PASD_DistPot_LetterClass
PASD_InvPot
PASD_InvPot_LetterClass

class CDSList_PeakPtr(builtins.object)

    CDSList_PeakPtr(*args)

Methods defined here:

__delitem__(self, *args, **kwargs) -> 'void'

__getitem__(self, *args) -> 'CDSList< Peak * >'

__getslice__(self, *args, **kwargs) -> 'CDSList< Peak * >'

__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.

__len__(self, *args, **kwargs) -> 'int'

__repr__ = _swig_repr(self)

__setitem__(self, *args, **kwargs) -> 'void'

append(self, *args, **kwargs) -> 'void'

help(self, *args, **kwargs) -> 'String'

remove(self, *args, **kwargs) -> 'void'

removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:

__swig_destroy__ = delete_CDSList_PeakPtr(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

thisown

The membership flag

class Modified(builtins.object)

    Modified(*args, **kwargs)

Methods defined here:

__call__(self, *args, **kwargs) -> 'int'
Call self as a function.

__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

asString(self, *args, **kwargs) -> 'String'

assertClear(self, *args, **kwargs) -> 'void'

clear(self, *args, **kwargs) -> 'void'

set(self, *args, **kwargs) -> 'void'

update(self, *args, **kwargs) -> 'void'

value(self, *args, **kwargs) -> 'int'

Static methods defined here:

__swig_destroy__ = delete_Modified(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

thisown

The membership flag

Data and other attributes defined here:

MOD_SELF = 1

MOD_SIMULATION = 2

class ModifiedBase(builtins.object)

    ModifiedBase(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

registerTo(self, *args, **kwargs) -> 'void'

unRegister(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

Static methods defined here:

__swig_destroy__ = delete_ModifiedBase(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

modified

registeredSimulations

thisown

The membership flag

class PASDPot_LetterClass(builtins.object)

    PASDPot_LetterClass(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

accountedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

activateAllAssigns(self, *args, **kwargs) -> 'void'

addException(self, *args, **kwargs) -> 'void'

addPeak(self, *args, **kwargs) -> 'void'

addShiftAssignment(self, *args, **kwargs) -> 'void'

allowShiftAssignmentInactivation(self, *args, **kwargs) -> 'void'

allowsShiftAssignmentInactivation(self, *args, **kwargs) -> 'int'

cacheNeighbors(self, *args, **kwargs) -> 'void'

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

calcInverseEnergy(self, *args, **kwargs) -> 'EnergyReport'

calcNormalEnergy(self, *args, **kwargs) -> 'EnergyReport'

characteristicDeltaDV(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaNoeCompleteness(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaPL(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaScatter(self, *args, **kwargs) -> 'float_type const'

characteristicDistanceViol(self, *args, **kwargs) -> 'float_type const'

characteristicNoeCompleteness(self, *args, **kwargs) -> 'float_type const'

characteristicScatter(self, *args, **kwargs) -> 'float_type const'

clearMissingLinksToPeakAssignments(self, *args, **kwargs) -> 'void'

disallowShiftAssignmentInactivation(self, *args, **kwargs) -> 'void'

distPot_cxx(self, *args, **kwargs) -> 'rc_DerivedPot< PASD_DistPot >'

distanceViolationWeight(self, *args, **kwargs) -> 'float_type const'

exceptions(self, *args, **kwargs) -> 'CDSList< String >'

expectedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

fracPeakAssignsInactive(self, *args, **kwargs) -> 'float_type'

fromShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

goodScore1(self, *args, **kwargs) -> 'float_type'

goodScore2(self, *args, **kwargs) -> 'float_type'

hasException(self, *args, **kwargs) -> 'bool'

hasPeakNamed(self, *args, **kwargs) -> 'int'

hasShiftAssignmentNamed(self, *args, **kwargs) -> 'int'

inactivateAllAssigns(self, *args, **kwargs) -> 'void'

invPot_cxx(self, *args, **kwargs) -> 'rc_DerivedPot< PASD_InvPot >'

inverseBound(self, *args, **kwargs) -> 'float_type'

inverseMethylCorrection(self, *args, **kwargs) -> 'float_type'

inverseNoeNeighborhoodSize(self, *args, **kwargs) -> 'float_type'

longRangePrimarySeqCutoff(self, *args, **kwargs) -> 'int const'

maxMonteCarloAttempts(self, *args, **kwargs) -> 'int const'

neighborsNeedUpdate(self, *args, **kwargs) -> 'int'

noeCompletenessScore(self, *args, **kwargs) -> 'float_type'

noeCompletenessWeight(self, *args, **kwargs) -> 'float_type const'

numActivePeaks(self, *args, **kwargs) -> 'int'

numCloseAccountedShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numClosePAAccountedShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numCloseShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numFromShiftAssignments(self, *args, **kwargs) -> 'int'

numInactivePeaks(self, *args, **kwargs) -> 'int'

numPeaks(self, *args, **kwargs) -> 'int'

numRestraints(self, *args, **kwargs) -> 'int'

numShiftAssignments(self, *args, **kwargs) -> 'int'

numShiftAssignmentsInWrongNeighborhood(self, *args, **kwargs) -> 'int'

numToShiftAssignments(self, *args, **kwargs) -> 'int'

peakCoverageScore(self, *args, **kwargs) -> 'float_type'

peakNamed(self, *args, **kwargs) -> 'PeakPtr'

peaks(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

peaksWithShiftAssignmentNamed(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

peaksWithShiftAssignmentsNamed(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

previousLikelihoodScore(self, *args, **kwargs) -> 'float_type'

previousLikelihoodWeight(self, *args, **kwargs) -> 'float_type const'

pyXplorHelp(self, *args, **kwargs) -> 'String'

recordActivePeakAssignments(self, *args, **kwargs) -> 'void'

removeAllExceptions(self, *args, **kwargs) -> 'void'

removeExceptionsInvolving(self, *args, **kwargs) -> 'void'

removePeakAssignmentsInvolving(self, *args, **kwargs) -> 'void'

removePeakNamed(self, *args, **kwargs) -> 'void'

removeShiftAssignmentNamed(self, *args, **kwargs) -> 'void'

resetLinkedPeakAssignmentNames(self, *args, **kwargs) -> 'void'

resetLinkedPeakAssignments(self, *args, **kwargs) -> 'void'

resetSavedState(self, *args, **kwargs) -> 'void'

revertToSavedState(self, *args, **kwargs) -> 'void'

rms(self, *args, **kwargs) -> 'float_type'

saveCurrentState(self, *args, **kwargs) -> 'void'

scatterScore(self, *args, **kwargs) -> 'float_type'

scatterWeight(self, *args, **kwargs) -> 'float_type const'

setAllShiftAssignmentsInRightNeighborhood(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaDV(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaNoeCompleteness(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaPL(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaScatter(self, *args, **kwargs) -> 'void'

setCharacteristicDistanceViol(self, *args, **kwargs) -> 'void'

setCharacteristicNoeCompleteness(self, *args, **kwargs) -> 'void'

setCharacteristicScatter(self, *args, **kwargs) -> 'void'

setDistanceViolationWeight(self, *args, **kwargs) -> 'void'

setInverseBound(self, *args, **kwargs) -> 'void'

setInverseMethylCorrection(self, *args, **kwargs) -> 'void'

setInverseNoeNeighborhoodSize(self, *args, **kwargs) -> 'void'

setLongRangePrimarySeqCutoff(self, *args, **kwargs) -> 'void'

setMaxMonteCarloAttempts(self, *args, **kwargs) -> 'void'

setNoeCompletenessWeight(self, *args, **kwargs) -> 'void'

setPreviousLikelihoodWeight(self, *args, **kwargs) -> 'void'

setScatterWeight(self, *args, **kwargs) -> 'void'

setSwitchViolation(self, *args, **kwargs) -> 'void'

setUseOriginalViolationScore(self, *args, **kwargs) -> 'void'

setUseQuadraticPot(self, *args, **kwargs) -> 'void'

setUseSingleAssignment(self, *args, **kwargs) -> 'void'

setViolationCutoff(self, *args, **kwargs) -> 'void'

shiftAssignmentNamed(self, *args, **kwargs) -> 'ShiftAssignmentPtr'

shiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

shiftAssignmentsWithPeakNamed(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

simulation(self, *args, **kwargs) -> 'Simulation *'

switchViolation(self, *args, **kwargs) -> 'float_type'

toShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

unaccountedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

updateActivation(self, *args, **kwargs) -> 'CDSList< float_type >'

updateLinkedPeakAssignments(self, *args, **kwargs) -> 'void'

updateNoeCompleteness(self, *args, **kwargs) -> 'void'

updatePeakPositionScatter(self, *args, **kwargs) -> 'void'

updatePrimarySeqDists(self, *args, **kwargs) -> 'void'

useOriginalViolationScore(self, *args, **kwargs) -> 'bool const'

useQuadraticPot(self, *args, **kwargs) -> 'bool const'

useSingleAssignment(self, *args, **kwargs) -> 'bool const'

violationCutoff(self, *args, **kwargs) -> 'float_type const'

violationScore(self, *args, **kwargs) -> 'float_type'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASDPot_LetterClass(...)

Readonly properties defined here:

distPot_member

invPot_member

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

distEnergy

invEnergy

staleGradient

thisown

The membership flag

class PASD_DistPot_LetterClass(builtins.object)

    PASD_DistPot_LetterClass(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

numRestraints(self, *args, **kwargs) -> 'int'

pyXplorHelp(self, *args, **kwargs) -> 'String'

rms(self, *args, **kwargs) -> 'float_type'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASD_DistPot_LetterClass(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

thisown

The membership flag

class PASD_InvPot_LetterClass(builtins.object)

    PASD_InvPot_LetterClass(*args, **kwargs)

Methods defined here:

__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.

__repr__ = _swig_repr(self)

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

numRestraints(self, *args, **kwargs) -> 'int'

pyXplorHelp(self, *args, **kwargs) -> 'String'

rms(self, *args, **kwargs) -> 'float_type'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASD_InvPot_LetterClass(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

thisown

The membership flag

realPASDPot = class PASDPot(builtins.object)

    realPASDPot(*args)

Methods defined here:

__deref__(self, *args, **kwargs) -> 'PASDPot *'

__init__(self, *args)

__oldinit__ = __init__(self, *args, **kwargs)

__ref__(self, *args, **kwargs) -> 'PASDPot &'

__repr__ = _swig_repr(self)

accountedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

activateAllAssigns(self, *args, **kwargs) -> 'void'

addException(self, *args, **kwargs) -> 'void'

addPeak(self, *args, **kwargs) -> 'void'

addShiftAssignment(self, *args, **kwargs) -> 'void'

allowShiftAssignmentInactivation(self, *args, **kwargs) -> 'void'

allowsShiftAssignmentInactivation(self, *args, **kwargs) -> 'int'

cacheNeighbors(self, *args, **kwargs) -> 'void'

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

calcInverseEnergy(self, *args, **kwargs) -> 'EnergyReport'

calcNormalEnergy(self, *args, **kwargs) -> 'EnergyReport'

characteristicDeltaDV(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaNoeCompleteness(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaPL(self, *args, **kwargs) -> 'float_type const'

characteristicDeltaScatter(self, *args, **kwargs) -> 'float_type const'

characteristicDistanceViol(self, *args, **kwargs) -> 'float_type const'

characteristicNoeCompleteness(self, *args, **kwargs) -> 'float_type const'

characteristicScatter(self, *args, **kwargs) -> 'float_type const'

clearMissingLinksToPeakAssignments(self, *args, **kwargs) -> 'void'

decrRefCnt(self, *args, **kwargs) -> 'void'

disallowShiftAssignmentInactivation(self, *args, **kwargs) -> 'void'

distPot(self)

distPot_cxx(self, *args, **kwargs) -> 'rc_DerivedPot< PASD_DistPot >'

distanceViolationWeight(self, *args, **kwargs) -> 'float_type const'

exceptions(self, *args, **kwargs) -> 'CDSList< String >'

expectedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

fracPeakAssignsInactive(self, *args, **kwargs) -> 'float_type'

fromShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

goodScore1(self, *args, **kwargs) -> 'float_type'

goodScore2(self, *args, **kwargs) -> 'float_type'

hasException(self, *args, **kwargs) -> 'bool'

hasPeakNamed(self, *args, **kwargs) -> 'int'

hasShiftAssignmentNamed(self, *args, **kwargs) -> 'int'

inactivateAllAssigns(self, *args, **kwargs) -> 'void'

incrRefCnt(self, *args, **kwargs) -> 'void'

instanceData(self, *args, **kwargs) -> 'PyObject *'

instanceName(self, *args, **kwargs) -> 'char const *'

invPot(self)

invPot_cxx(self, *args, **kwargs) -> 'rc_DerivedPot< PASD_InvPot >'

inverseBound(self, *args, **kwargs) -> 'float_type'

inverseMethylCorrection(self, *args, **kwargs) -> 'float_type'

inverseNoeNeighborhoodSize(self, *args, **kwargs) -> 'float_type'

longRangePrimarySeqCutoff(self, *args, **kwargs) -> 'int const'

maxMonteCarloAttempts(self, *args, **kwargs) -> 'int const'

neighborsNeedUpdate(self, *args, **kwargs) -> 'int'

noeCompletenessScore(self, *args, **kwargs) -> 'float_type'

noeCompletenessWeight(self, *args, **kwargs) -> 'float_type const'

numActivePeaks(self, *args, **kwargs) -> 'int'

numCloseAccountedShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numClosePAAccountedShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numCloseShiftAssignmentPairs(self, *args, **kwargs) -> 'int'

numFromShiftAssignments(self, *args, **kwargs) -> 'int'

numInactivePeaks(self, *args, **kwargs) -> 'int'

numPeaks(self, *args, **kwargs) -> 'int'

numRestraints(self, *args, **kwargs) -> 'int'

numShiftAssignments(self, *args, **kwargs) -> 'int'

numShiftAssignmentsInWrongNeighborhood(self, *args, **kwargs) -> 'int'

numToShiftAssignments(self, *args, **kwargs) -> 'int'

peakCoverageScore(self, *args, **kwargs) -> 'float_type'

peakNamed(self, *args, **kwargs) -> 'PeakPtr'

peaks(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

peaksWithShiftAssignmentNamed(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

peaksWithShiftAssignmentsNamed(self, *args, **kwargs) -> 'CDSList< PeakPtr >'

potName(self, *args, **kwargs) -> 'char const *'

previousLikelihoodScore(self, *args, **kwargs) -> 'float_type'

previousLikelihoodWeight(self, *args, **kwargs) -> 'float_type const'

pyXplorHelp(self, *args, **kwargs) -> 'String'

recordActivePeakAssignments(self, *args, **kwargs) -> 'void'

refCnt(self, *args, **kwargs) -> 'int'

registerInstanceData(self, *args, **kwargs) -> 'void'

registerTo(self, *args, **kwargs) -> 'void'

removeAllExceptions(self, *args, **kwargs) -> 'void'

removeExceptionsInvolving(self, *args, **kwargs) -> 'void'

removePeakAssignmentsInvolving(self, *args, **kwargs) -> 'void'

removePeakNamed(self, *args, **kwargs) -> 'void'

removeShiftAssignmentNamed(self, *args, **kwargs) -> 'void'

resetInstanceName(self, *args, **kwargs) -> 'void'

resetLinkedPeakAssignmentNames(self, *args, **kwargs) -> 'void'

resetLinkedPeakAssignments(self, *args, **kwargs) -> 'void'

resetPotName(self, *args, **kwargs) -> 'void'

resetSavedState(self, *args, **kwargs) -> 'void'

revertToSavedState(self, *args, **kwargs) -> 'void'

rms(self, *args, **kwargs) -> 'float_type'

saveCurrentState(self, *args, **kwargs) -> 'void'

scale(self, *args, **kwargs) -> 'float_type const'

scatterScore(self, *args, **kwargs) -> 'float_type'

scatterWeight(self, *args, **kwargs) -> 'float_type const'

setAllShiftAssignmentsInRightNeighborhood(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaDV(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaNoeCompleteness(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaPL(self, *args, **kwargs) -> 'void'

setCharacteristicDeltaScatter(self, *args, **kwargs) -> 'void'

setCharacteristicDistanceViol(self, *args, **kwargs) -> 'void'

setCharacteristicNoeCompleteness(self, *args, **kwargs) -> 'void'

setCharacteristicScatter(self, *args, **kwargs) -> 'void'

setDistanceViolationWeight(self, *args, **kwargs) -> 'void'

setInverseBound(self, *args, **kwargs) -> 'void'

setInverseMethylCorrection(self, *args, **kwargs) -> 'void'

setInverseNoeNeighborhoodSize(self, *args, **kwargs) -> 'void'

setLongRangePrimarySeqCutoff(self, *args, **kwargs) -> 'void'

setMaxMonteCarloAttempts(self, *args, **kwargs) -> 'void'

setNoeCompletenessWeight(self, *args, **kwargs) -> 'void'

setPreviousLikelihoodWeight(self, *args, **kwargs) -> 'void'

setScale(self, *args, **kwargs) -> 'void'

setScatterWeight(self, *args, **kwargs) -> 'void'

setSwitchViolation(self, *args, **kwargs) -> 'void'

setThreshold(self, *args, **kwargs) -> 'void'

setUseOriginalViolationScore(self, *args, **kwargs) -> 'void'

setUseQuadraticPot(self, *args, **kwargs) -> 'void'

setUseSingleAssignment(self, *args, **kwargs) -> 'void'

setViolationCutoff(self, *args, **kwargs) -> 'void'

shiftAssignmentNamed(self, *args, **kwargs) -> 'ShiftAssignmentPtr'

shiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

shiftAssignmentsWithPeakNamed(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

simulation(self, *args, **kwargs) -> 'Simulation *'

switchViolation(self, *args, **kwargs) -> 'float_type'

threshold(self, *args, **kwargs) -> 'float_type const'

toShiftAssignments(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

unRegister(self, *args, **kwargs) -> 'void'

unaccountedNeighbors(self, *args, **kwargs) -> 'CDSList< ShiftAssignmentPtr >'

updateActivation(self, *args, **kwargs) -> 'CDSList< float_type >'

updateDelta(self, *args, **kwargs) -> 'void'

updateLinkedPeakAssignments(self, *args, **kwargs) -> 'void'

updateNoeCompleteness(self, *args, **kwargs) -> 'void'

updatePeakPositionScatter(self, *args, **kwargs) -> 'void'

updatePrimarySeqDists(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

useOriginalViolationScore(self, *args, **kwargs) -> 'bool const'

useQuadraticPot(self, *args, **kwargs) -> 'bool const'

useSingleAssignment(self, *args, **kwargs) -> 'bool const'

violationCutoff(self, *args, **kwargs) -> 'float_type const'

violationScore(self, *args, **kwargs) -> 'float_type'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASDPot(...)

Readonly properties defined here:

distPot_member

invPot_member

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

distEnergy

instanceDataCleanup

instanceDataCreate

instanceData_

invEnergy

modified

registeredSimulations

staleGradient

thisown

The membership flag

realPASD_DistPot = class PASD_DistPot(builtins.object)

    realPASD_DistPot(*args)

Methods defined here:

__deref__(self, *args, **kwargs) -> 'PASD_DistPot *'

__init__(self, *args)

__oldinit__ = __init__(self, *args, **kwargs)

__ref__(self, *args, **kwargs) -> 'PASD_DistPot &'

__repr__ = _swig_repr(self)

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

decrRefCnt(self, *args, **kwargs) -> 'void'

incrRefCnt(self, *args, **kwargs) -> 'void'

instanceData(self, *args, **kwargs) -> 'PyObject *'

instanceName(self, *args, **kwargs) -> 'char const *'

numRestraints(self, *args, **kwargs) -> 'int'

potName(self, *args, **kwargs) -> 'char const *'

pyXplorHelp(self, *args, **kwargs) -> 'String'

refCnt(self, *args, **kwargs) -> 'int'

registerInstanceData(self, *args, **kwargs) -> 'void'

registerTo(self, *args, **kwargs) -> 'void'

resetInstanceName(self, *args, **kwargs) -> 'void'

resetPotName(self, *args, **kwargs) -> 'void'

rms(self, *args, **kwargs) -> 'float_type'

scale(self, *args, **kwargs) -> 'float_type const'

setScale(self, *args, **kwargs) -> 'void'

setThreshold(self, *args, **kwargs) -> 'void'

threshold(self, *args, **kwargs) -> 'float_type const'

unRegister(self, *args, **kwargs) -> 'void'

updateDelta(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASD_DistPot(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

instanceDataCleanup

instanceDataCreate

instanceData_

modified

registeredSimulations

thisown

The membership flag

realPASD_InvPot = class PASD_InvPot(builtins.object)

    realPASD_InvPot(*args)

Methods defined here:

__deref__(self, *args, **kwargs) -> 'PASD_InvPot *'

__init__(self, *args)

__oldinit__ = __init__(self, *args, **kwargs)

__ref__(self, *args, **kwargs) -> 'PASD_InvPot &'

__repr__ = _swig_repr(self)

calcEnergy(self, *args, **kwargs) -> 'float_type'

calcEnergyAndDerivs(self, *args, **kwargs) -> 'float_type'

decrRefCnt(self, *args, **kwargs) -> 'void'

incrRefCnt(self, *args, **kwargs) -> 'void'

instanceData(self, *args, **kwargs) -> 'PyObject *'

instanceName(self, *args, **kwargs) -> 'char const *'

numRestraints(self, *args, **kwargs) -> 'int'

potName(self, *args, **kwargs) -> 'char const *'

pyXplorHelp(self, *args, **kwargs) -> 'String'

refCnt(self, *args, **kwargs) -> 'int'

registerInstanceData(self, *args, **kwargs) -> 'void'

registerTo(self, *args, **kwargs) -> 'void'

resetInstanceName(self, *args, **kwargs) -> 'void'

resetPotName(self, *args, **kwargs) -> 'void'

rms(self, *args, **kwargs) -> 'float_type'

scale(self, *args, **kwargs) -> 'float_type const'

setScale(self, *args, **kwargs) -> 'void'

setThreshold(self, *args, **kwargs) -> 'void'

threshold(self, *args, **kwargs) -> 'float_type const'

unRegister(self, *args, **kwargs) -> 'void'

updateDelta(self, *args, **kwargs) -> 'void'

updateValues(self, *args, **kwargs) -> 'void'

violations(self, *args, **kwargs) -> 'float_type'

Static methods defined here:

__swig_destroy__ = delete_PASD_InvPot(...)

Data descriptors defined here:

__dict__

dictionary for instance variables (if defined)

__weakref__

list of weak references to the object (if defined)

instanceDataCleanup

instanceDataCreate

instanceData_

modified

registeredSimulations

thisown

The membership flag

Functions

NOEPot = PASDPot(*args)

PASDPot(*args)

PASD_DistPot(*args)

PASD_InvPot(*args)

pyXplorHelp(*args) -> 'String'