Output PASD data as restraint lists.

Functions
		estimateBounds(intensity, distanceBins) Given a peak's intensity and a list  of (min intensity, upper bound) pairs, return the proper lower and upper bounds. generateDistanceBounds(peaks) Given a sequence of Peaks, set the distance bounds for each peak from binning the intensities. getDistanceBinsFromIntensities(intensities, distanceBins=None) # uses Dan Garrett's "algorithm": # 1.  Sort intensities list # 2.  largest 20% of peaks become "strong" (1.8 - 2.7) # 3.  next 30% become "medium" (1.8 - 3.3) # 4.  next 30% into "weak" (1.8 - 5.0) # 5.  last 20% into "very weak" (1.8 - 6.0)   The distanceBins argument contains a sequence of 3-membered tuples, the first two of which specify the lower and upper distance bounds,  while the third specifies the lower bound of the absolute value of  intensity of a peak relative in the intensity range of the input values.   Returns a list of tuples containing  (lowerIntensityBound, (lowerDist, upperDist)) makeNEFRestraintLinks(restraintTables, linkageInfo) Generate a nef_peak_restraint_links saveset linking PASD peak assignments to NEF peaks.   Return a string NEF record. removeInterSegidPAs(pasdPot, segidSel1, segidSel2) Remove all peak assignments for which from- and to- protonSelections intersect segidSel1 and segidSel2, or segidSel2 and segidSel1, respectively. removeIntersectedPeakAssignments(peak) Removes peakAssignments whose from and to shiftAssignments have  intersecting proton selections.   To be used before writing out in classic xplor table format,  since the classic xplor NOE potential can't handle non-disjoint selection pairs. removeIntraSegidPAs(pasdPot, segidSel) Remove all peak assignments whose from- and to-protonSelections intersect the atom selection given by segidSel. removeLowLikelihoodPeakAssignments(pot, cutoff=0.9, preventUnassignment=False) Remove peak assignments with likelihood lower than the cutoff value. If preventUnassignment=True, in the event of a peak having no assignments greater than cutoff, keep that with the largest likelihood rather than deleting the peak entirely.   Returns a named tuple with these members   numRemoved       - number of removed peak assignments   numPeaksAffected - number of peaks having some peak assignments removed   numLRremoved     - number of removed long-range peak assignments   numGoodRemoved   - number of removed good peak assignments   numGoodLRremoved - number of removed good long-range peak assignments writeOneXplorAssignment(outfile, peak, removeIntersected) Internal routine to be called by writeXplorAssignments. writeXplorAssignments(filename=None, remarksList=[], noePot=None, peaks=[], removeIntersected=True) Routine to write XPLOR assignment statements for PASD peaks.   Given a list of pasdPeak.Peaks or a pasdPot.PASDPot, write out appropriate XPLOR-formatted restraints from the associated assignments.