Python: module atomProbHeight
 
atomProbHeight
index

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# This file was automatically generated by SWIG (http://www.swig.org).
# Version 4.0.2
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.

 
Classes
       
atomProb.AtomProb(builtins.object)
AtomProbHeight
builtins.object
CDSList_DComplex
CDSList_EigenPair_DComplex
CDSList_EigenPair_double
CDSMatrix_float_type
CDSVectorBase_float_type_long
CDSVector_float_type_0_long_int
EigenPair_DComplex
EigenPair_double

 
class AtomProbHeight(atomProb.AtomProb)
    AtomProbHeight(*args, **kwargs)
 

 
 
Method resolution order:
AtomProbHeight
atomProb.AtomProb
builtins.object

Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
calc(self, *args, **kwargs) -> 'void'
calcGradient(self, *args, **kwargs) -> 'void'
gamma(self, *args, **kwargs) -> 'float_type const'
info(self, *args, **kwargs) -> 'String'
maxType(self, *args, **kwargs) -> 'AtomProbHeight::MaxType const'
qc(self, *args, **kwargs) -> 'Vec3 const'
radiusGradient(self, *args, **kwargs) -> 'CDSVector< float_type >'
setGamma(self, *args, **kwargs) -> 'void'
setMaxType(self, *args, **kwargs) -> 'void'
setQc(self, *args, **kwargs) -> 'void'
setSigma(self, *args, **kwargs) -> 'void'
sigma(self, *args, **kwargs) -> 'float_type const'
zMin(self, *args, **kwargs) -> 'float_type'
zMinSoft(self, *args, **kwargs) -> 'float_type'

Static methods defined here:
__swig_destroy__ = delete_AtomProbHeight(...)

Data descriptors defined here:
heightGrid

 
heightSoftGrid

 
indexMaxGrid

 
indexMin

 
sumExpGrid

 
thisown

 
The membership flag
zMinSoftDenom

 
zMinSoft_

 
zMin_

 

Data and other attributes defined here:
HARD = 0
LOGSUMEXP = 1

Methods inherited from atomProb.AtomProb:
atomRadius(self, *args, **kwargs) -> 'double'
atomWeights(self, *args, **kwargs) -> 'CDSVector< float_type > const'
copyGrid(self, *args, **kwargs) -> 'void'
distType(self, *args, **kwargs) -> 'AtomProb::DistType'
generateGrid(self, *args, **kwargs) -> 'bool const'
getGrid(self, *args, **kwargs) -> 'DensityGrid *'
getGridRaw(self, *args, **kwargs) -> 'DensityGrid *'
gridParams(self, *args, **kwargs) -> 'DensityGrid_Params const'
mapResolution(self, *args, **kwargs) -> 'float_type const'
mapType(self, *args, **kwargs) -> 'AtomProb::MapType'
modified(self, *args, **kwargs) -> 'bool'
orientation(self, *args, **kwargs) -> 'Mat3 const'
pyXplorHelp(self, *args, **kwargs) -> 'String'
radii(self, *args, **kwargs) -> 'CDSVector< float_type > const'
scaleType(self, *args, **kwargs) -> 'AtomProb::ScaleType'
selection(self, *args, **kwargs) -> 'AtomSel'
setAtomRadius(self, *args, **kwargs) -> 'void'
setAtomWeights(self, *args, **kwargs) -> 'void'
setDistType(self, *args, **kwargs) -> 'void'
setGenerateGrid(self, *args, **kwargs) -> 'void'
setGridParams(self, *args, **kwargs) -> 'void'
setIsProjection(s, isProjection)
backwards compatibility
setMapResolution(self, *args, **kwargs) -> 'void'
setMapType(self, *args, **kwargs) -> 'void'
setOrientation(self, *args, **kwargs) -> 'void'
setRadii(self, *args, **kwargs) -> 'void'
setScaleType(self, *args, **kwargs) -> 'void'
setTranslation(self, *args, **kwargs) -> 'void'
setVerbose(self, *args, **kwargs) -> 'void'
setWeights(self, *args, **kwargs) -> 'void'
translation(self, *args, **kwargs) -> 'Vec3 const'
updateValues(self, *args, **kwargs) -> 'void'
val(self, *args, **kwargs) -> 'double'
verbose(self, *args, **kwargs) -> 'bool const'
weights(self, *args, **kwargs) -> 'CDSVector< float_type >'
writeEDM(self, *args, **kwargs) -> 'void'

Data descriptors inherited from atomProb.AtomProb:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
d_dR

 
d_dt

 

Data and other attributes inherited from atomProb.AtomProb:
AMPLITUDE = 0
DENSITY = 0
DISTRIBUTION = 1
FLAT = 3
GAUSSIAN = 1
HEIGHT = 2
NORMALIZE = 2
OFF = 4
PROJECTION = 1
QUARTIC = 0
QUARTICSPREAD = 2
VOLUME = 5

 
class CDSList_DComplex(builtins.object)
    CDSList_DComplex(*args)
 

 
  Methods defined here:
__delitem__(self, *args, **kwargs) -> 'void'
__getitem__(self, *args) -> 'CDSList< DComplex >'
__getslice__(self, *args, **kwargs) -> 'CDSList< DComplex >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__len__(self, *args, **kwargs) -> 'int'
__repr__ = _swig_repr(self)
__setitem__(self, *args, **kwargs) -> 'void'
append(self, *args, **kwargs) -> 'void'
help(self, *args, **kwargs) -> 'String'
remove(self, *args, **kwargs) -> 'void'
removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSList_DComplex(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class CDSList_EigenPair_DComplex(builtins.object)
    CDSList_EigenPair_DComplex(*args)
 

 
  Methods defined here:
__delitem__(self, *args, **kwargs) -> 'void'
__getitem__(self, *args) -> 'CDSList< EigenPair< DComplex > >'
__getslice__(self, *args, **kwargs) -> 'CDSList< EigenPair< DComplex > >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__len__(self, *args, **kwargs) -> 'int'
__repr__ = _swig_repr(self)
__setitem__(self, *args, **kwargs) -> 'void'
append(self, *args, **kwargs) -> 'void'
help(self, *args, **kwargs) -> 'String'
remove(self, *args, **kwargs) -> 'void'
removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSList_EigenPair_DComplex(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class CDSList_EigenPair_double(builtins.object)
    CDSList_EigenPair_double(*args)
 

 
  Methods defined here:
__delitem__(self, *args, **kwargs) -> 'void'
__getitem__(self, *args) -> 'CDSList< EigenPair< double > >'
__getslice__(self, *args, **kwargs) -> 'CDSList< EigenPair< double > >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__len__(self, *args, **kwargs) -> 'int'
__repr__ = _swig_repr(self)
__setitem__(self, *args, **kwargs) -> 'void'
append(self, *args, **kwargs) -> 'void'
help(self, *args, **kwargs) -> 'String'
remove(self, *args, **kwargs) -> 'void'
removeAll(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSList_EigenPair_double(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class CDSMatrix_float_type(builtins.object)
    CDSMatrix_float_type(*args)
 

 
  Methods defined here:
__add__(self, *args, **kwargs) -> 'CDSMatrix< double >'
__getitem__(self, *args, **kwargs) -> 'double'
__iadd__(self, *args, **kwargs) -> 'CDSMatrix< double >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__mul__(self, *args) -> 'CDSMatrix< double >'
__neg__(self, *args, **kwargs) -> 'CDSMatrix< double >'
__repr__(self, *args, **kwargs) -> 'String'
Return repr(self).
__rmul__(self, *args, **kwargs) -> 'CDSMatrix< double >'
__setitem__(self, *args, **kwargs) -> 'void'
__str__(self, *args, **kwargs) -> 'String'
Return str(self).
__sub__(self, *args, **kwargs) -> 'CDSMatrix< double >'
add(self, *args, **kwargs) -> 'void'
cols(self, *args, **kwargs) -> 'int'
fromList(s, l)
get(self, *args, **kwargs) -> 'double'
rawData(self, *args, **kwargs) -> 'CDSVector< double >'
resize(self, *args, **kwargs) -> 'void'
rows(self, *args, **kwargs) -> 'int'
scale(self, *args, **kwargs) -> 'void'
set(self, *args) -> 'void'
setDiag(self, *args) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSMatrix_float_type(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
class CDSVectorBase_float_type_long(builtins.object)
    CDSVectorBase_float_type_long(*args)
 

 
  Methods defined here:
__call__(self, *args, **kwargs) -> 'double const &'
Call self as a function.
__iadd__(self, *args) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__isub__(self, *args) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
__repr__ = _swig_repr(self)
copy(self, *args) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
count(self, *args, **kwargs) -> 'int'
data(self, *args) -> 'double const &'
loadRawArray(self, *args, **kwargs) -> 'void'
pointer(self, *args) -> 'double *'
remove(self, *args, **kwargs) -> 'void'
resize(self, *args, **kwargs) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
set(self, *args, **kwargs) -> 'void'
setAlloc(self, *args, **kwargs) -> 'void'
size(self, *args, **kwargs) -> 'long'
splitRep(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSVectorBase_float_type_long(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag

 
CDSVector_float_type = class CDSVector_float_type_0_long_int(CDSVectorBase_float_type_long)
    CDSVector_float_type(*args)
 

 
 
Method resolution order:
CDSVector_float_type_0_long_int
CDSVectorBase_float_type_long
builtins.object

Methods defined here:
__add__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__call__(self, *args) -> 'double const &'
Call self as a function.
__getitem__(self, *args, **kwargs)
__getslice__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__iadd__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__imul__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__isub__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__itruediv__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__len__(self, *args, **kwargs) -> 'long'
__mul__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__neg__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__pow__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__radd__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__repr__ = _swig_repr(self)
__rmul__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__rsub__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__rtruediv__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__setitem__(self, *args, **kwargs) -> 'void'
__str__(self, *args, **kwargs) -> 'String'
Return str(self).
__sub__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__truediv__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
append(self, *args, **kwargs) -> 'void'
fromList(s, l)
get(self, *args, **kwargs) -> 'double'
help(self, *args, **kwargs) -> 'String'
offset(self, *args, **kwargs) -> 'int'
scale(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSVector_float_type_0_long_int(...)

Data descriptors defined here:
thisown

 
The membership flag

Methods inherited from CDSVectorBase_float_type_long:
copy(self, *args) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
count(self, *args, **kwargs) -> 'int'
data(self, *args) -> 'double const &'
loadRawArray(self, *args, **kwargs) -> 'void'
pointer(self, *args) -> 'double *'
remove(self, *args, **kwargs) -> 'void'
resize(self, *args, **kwargs) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
set(self, *args, **kwargs) -> 'void'
setAlloc(self, *args, **kwargs) -> 'void'
size(self, *args, **kwargs) -> 'long'
splitRep(self, *args, **kwargs) -> 'void'

Data descriptors inherited from CDSVectorBase_float_type_long:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)

 
class CDSVector_float_type_0_long_int(CDSVectorBase_float_type_long)
    CDSVector_float_type_0_long_int(*args)
 

 
 
Method resolution order:
CDSVector_float_type_0_long_int
CDSVectorBase_float_type_long
builtins.object

Methods defined here:
__add__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__call__(self, *args) -> 'double const &'
Call self as a function.
__getitem__(self, *args, **kwargs)
__getslice__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__iadd__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__imul__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__init__(self, *args)
Initialize self.  See help(type(self)) for accurate signature.
__isub__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__itruediv__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__len__(self, *args, **kwargs) -> 'long'
__mul__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__neg__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__pow__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__radd__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__repr__ = _swig_repr(self)
__rmul__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__rsub__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__rtruediv__(self, *args, **kwargs) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__setitem__(self, *args, **kwargs) -> 'void'
__str__(self, *args, **kwargs) -> 'String'
Return str(self).
__sub__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
__truediv__(self, *args) -> 'CDSVector< float_type,0,CDS::DefaultAlloc,long,int >'
append(self, *args, **kwargs) -> 'void'
fromList(s, l)
get(self, *args, **kwargs) -> 'double'
help(self, *args, **kwargs) -> 'String'
offset(self, *args, **kwargs) -> 'int'
scale(self, *args, **kwargs) -> 'void'

Static methods defined here:
__swig_destroy__ = delete_CDSVector_float_type_0_long_int(...)

Data descriptors defined here:
thisown

 
The membership flag

Methods inherited from CDSVectorBase_float_type_long:
copy(self, *args) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
count(self, *args, **kwargs) -> 'int'
data(self, *args) -> 'double const &'
loadRawArray(self, *args, **kwargs) -> 'void'
pointer(self, *args) -> 'double *'
remove(self, *args, **kwargs) -> 'void'
resize(self, *args, **kwargs) -> 'CDSVectorBase< double,CDS::DefaultAlloc,long > &'
set(self, *args, **kwargs) -> 'void'
setAlloc(self, *args, **kwargs) -> 'void'
size(self, *args, **kwargs) -> 'long'
splitRep(self, *args, **kwargs) -> 'void'

Data descriptors inherited from CDSVectorBase_float_type_long:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)

 
class EigenPair_DComplex(builtins.object)
    EigenPair_DComplex(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
value(self, *args, **kwargs) -> 'DComplex'
vector(self, *args, **kwargs) -> 'CDSList< DComplex >'

Static methods defined here:
__swig_destroy__ = delete_EigenPair_DComplex(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag
value_

 
vector_

 

 
class EigenPair_double(builtins.object)
    EigenPair_double(*args, **kwargs)
 

 
  Methods defined here:
__init__(self, *args, **kwargs)
Initialize self.  See help(type(self)) for accurate signature.
__repr__ = _swig_repr(self)
value(self, *args, **kwargs) -> 'double'
vector(self, *args, **kwargs) -> 'CDSList< double >'

Static methods defined here:
__swig_destroy__ = delete_EigenPair_double(...)

Data descriptors defined here:
__dict__

 
dictionary for instance variables (if defined)
__weakref__

 
list of weak references to the object (if defined)
thisown

 
The membership flag
value_

 
vector_

 

 
Functions
       
cat(*args, **kwargs) -> 'CDSVector< double,0,CDS::DefaultAlloc,long,int >'
cat3(*args, **kwargs) -> 'CDSVector< double,0,CDS::DefaultAlloc,long,int >'
cat4(*args, **kwargs) -> 'CDSVector< double,0,CDS::DefaultAlloc,long,int >'
eigen(*args) -> 'CDSList< EigenPair< double >,10 >'
fast_max(*args, **kwargs) -> 'CDSMatrix< float_type >::ElementType'
fast_min(*args, **kwargs) -> 'CDSMatrix< float_type >::ElementType'
getCol(*args, **kwargs) -> 'CDSVector< CDSMatrix< float_type >::ElementType >'
getRow(*args, **kwargs) -> 'CDSVector< CDSMatrix< float_type >::ElementType >'
max(*args, **kwargs) -> 'double'
min(*args, **kwargs) -> 'double'
pyXplorHelp(*args) -> 'String'
sum(*args, **kwargs) -> 'double'
toAtomProbHeight(*args, **kwargs) -> 'AtomProbHeight *'
transpose(*args, **kwargs) -> 'CDSMatrix< float_type >'
vec_outerProd(*args, **kwargs) -> 'CDSMatrix< float_type >'

 
Data
        FALSE = 0
PI = 3.141592653589793
TRUE = 1
__CDSVector_hh__ = 1
__sthead_hh__ = 1