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Python: module pdbFormat

pdbFormat

Field definitions of ATOM and other records from the PDB format

Functions

getAtomEntry(name, record, ignoreShortEntries=False)
Given a single PDB ATOM record (one line), return the specified field
with field names given as the keys of the atomCols dictionary.

Data

atomCols = {'altLoc': (16, 17), 'chainID': (21, 22), 'charge': (78, 80), 'element': (76, 78), 'iCode': (26, 27), 'name': (12, 16), 'occupancy': (54, 60), 'resName': (17, 21), 'resSeq': (22, 26), 'segID': (72, 76), ...}

Functions
		getAtomEntry(name, record, ignoreShortEntries=False) Given a single PDB ATOM record (one line), return the specified field with field names given as the keys of the atomCols dictionary.

Data
		atomCols = {'altLoc': (16, 17), 'chainID': (21, 22), 'charge': (78, 80), 'element': (76, 78), 'iCode': (26, 27), 'name': (12, 16), 'occupancy': (54, 60), 'resName': (17, 21), 'resSeq': (22, 26), 'segID': (72, 76), ...}